Sorry. Maybe I didn’t describe clearly in my original post.
My goal is to find the highly likely values for the parameters \theta of the model.
I think that means I want:
- Plot of the log-likelihood (
logp) as a function of the parameters \theta. The plot will not display anything for the values that the sampler hasn’t visited. - Not a histogram of log-likelihood values.
- Not a histogram of the values of the parameters. That is the posterior distribution.
The traceplot is frequency vs value. I guess that describes the posterior distribution instead of likelihood of the parameters.
I don’t know if I should believe my prior is “weakly-informative”.
I am using Dirichlet instead of uniform prior. I saw that Dirichlet with \alpha = \vec{1} look like a triangle with uniform density. Maybe in that case, the prior is indeed weakly-informative?