I’m not sure if this is worth reporting as a very minor error, but I recently fit a rather straightforward model (1 variable sampled, <500k data points, sampling done in under 10 minutes, with no warnings reported at all), and pm.traceplot(my_difficult_trace) simply does not work for its trace. It e…

@Gon_F We have just merged a PR that should fix this issue. Installing ArviZ development version should do it. It optimizes memory usage and also adds a log_likelihood argument to from_pymc3 which allows to omit log likelihood data storage, which in your case even optimized can be quite challenging…

Plotting a trace potentially causes my Python kernel to crash?

Questions

ahartikainen November 30, 2019, 3:31pm 5

Can you transform your trace to InferenceData?

idata = az.from_pymc3(trace)

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Plotting a trace potentially causes my Python kernel to crash?

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