Pymc3 in docker

Questions v3
4

Hi, you may want to try the dockerfile on this link.

I copy it here for reference:

Using @bwengals docker image the model graph to png saving is work. Its not minimal but at least shows it can work!

FROM jupyter/minimal-notebook:python-3.9.5

USER root
RUN apt update && apt upgrade -y \
  && apt -y install --no-install-recommends -qq \
     curl ca-certificates make g++ git vim-tiny openssh-client \
     unzip tzdata htop \
  && apt clean && rm -rf /var/lib/apt/lists/*

USER ${NB_UID}
RUN mamba install -c conda-forge -y \
        compilers \
        filelock \
        cython \
        numpy \
        scipy \
        sympy \
        pypolyagamma \
        mkl \
        mkl-service \
        "libblas=*=*mkl" \
        numba \
        numba-scipy \
        "arviz>=0.11.2" \
        "cachetools>=4.2.1" \
        cloudpickle \
        "fastprogress>=0.2.0" \
        "h5py>=2.7" \
        "ipython>=7.16" \
        "libblas=*=*mkl" \
        mkl-service \
        myst-nb \
        "nbsphinx>=0.4" \
        "numpy>=1.15.0" \
        "numpydoc>=0.9" \
        "pandas>=0.24.0" \
        "pre-commit>=2.8.0" \
        pydata-sphinx-theme \
        "pytest-cov>=2.5" \
        "pytest>=3.0" \
        python-graphviz \
        "recommonmark>=0.4" \
        "scipy>1.4.1" \
        "sphinx-autobuild>=0.7" \
        sphinx-panels \
        "sphinx>=1.5" \
        "typing-extensions>=3.7.4" \
        watermark \
        voila \
    && conda clean --all -f -y \
    && fix-permissions "${CONDA_DIR}" \
    && fix-permissions "/home/${NB_USER}"

RUN mamba install -c conda-forge -y \
        scikit-learn linearmodels \
        matplotlib plotly bokeh ipywidgets pre-commit \
        xarray psycopg2 \
        fastapi toml \
    && conda clean --all -f -y \
    && fix-permissions "${CONDA_DIR}" \
    && fix-permissions "/home/${NB_USER}"

RUN mamba install -c conda-forge pymc3 -y \
    && conda clean --all -f -y \
    && fix-permissions "${CONDA_DIR}" \
    && fix-permissions "/home/${NB_USER}"


## other environment variables
ENV JUPYTER_ENABLE_LAB=1
WORKDIR /home/$NB_USER
USER ${NB_UID}

COPY ./model_test.py .

RUN python model_test.py
RUN ls
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