Atleast now I know the answer to this. This somehow happend because channel priority was set to flexible:
channels:
- conda-forge
- bioconda
- r
- defaults
auto_activate_base: false
channel_priority: flexible
which result also in a weird installation
pytensor 2.13.1 py311ha02d727_0
pytensor-base 2.17.3 py311h320fe9a_0 conda-forge
After changing that to strict, installs the environment as follows:
# packages in environment at /home/avicenna/miniconda3/envs/pymc_env_5_9_1_test6:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_kmp_llvm conda-forge
arviz 0.16.1 pyhd8ed1ab_1 conda-forge
asttokens 2.4.1 pyhd8ed1ab_0 conda-forge
atk-1.0 2.38.0 hd4edc92_1 conda-forge
backports 1.0 pyhd8ed1ab_3 conda-forge
backports.functools_lru_cache 1.6.5 pyhd8ed1ab_0 conda-forge
binutils_impl_linux-64 2.40 hf600244_0 conda-forge
binutils_linux-64 2.40 hbdbef99_2 conda-forge
blas 2.119 openblas conda-forge
blas-devel 3.9.0 19_linux64_openblas conda-forge
brotli 1.1.0 hd590300_1 conda-forge
brotli-bin 1.1.0 hd590300_1 conda-forge
bzip2 1.0.8 h7f98852_4 conda-forge
c-ares 1.20.1 hd590300_1 conda-forge
ca-certificates 2023.7.22 hbcca054_0 conda-forge
cached-property 1.5.2 hd8ed1ab_1 conda-forge
cached_property 1.5.2 pyha770c72_1 conda-forge
cachetools 5.3.2 pyhd8ed1ab_0 conda-forge
cairo 1.18.0 h3faef2a_0 conda-forge
certifi 2023.7.22 pyhd8ed1ab_0 conda-forge
cloudpickle 3.0.0 pyhd8ed1ab_0 conda-forge
comm 0.1.4 pyhd8ed1ab_0 conda-forge
cons 0.4.6 pyhd8ed1ab_0 conda-forge
contourpy 1.1.1 py311h9547e67_1 conda-forge
cycler 0.12.1 pyhd8ed1ab_0 conda-forge
debugpy 1.8.0 py311hb755f60_1 conda-forge
decorator 5.1.1 pyhd8ed1ab_0 conda-forge
etuples 0.3.9 pyhd8ed1ab_0 conda-forge
exceptiongroup 1.1.3 pyhd8ed1ab_0 conda-forge
executing 2.0.1 pyhd8ed1ab_0 conda-forge
expat 2.5.0 hcb278e6_1 conda-forge
fastprogress 1.0.3 pyhd8ed1ab_0 conda-forge
filelock 3.13.1 pyhd8ed1ab_0 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 hab24e00_0 conda-forge
fontconfig 2.14.2 h14ed4e7_0 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
fonttools 4.43.1 py311h459d7ec_0 conda-forge
freetype 2.12.1 h267a509_2 conda-forge
fribidi 1.0.10 h36c2ea0_0 conda-forge
gcc 12.3.0 h8d2909c_2 conda-forge
gcc_impl_linux-64 12.3.0 he2b93b0_2 conda-forge
gcc_linux-64 12.3.0 h76fc315_2 conda-forge
gdk-pixbuf 2.42.10 h829c605_4 conda-forge
gettext 0.21.1 h27087fc_0 conda-forge
giflib 5.2.1 h0b41bf4_3 conda-forge
graphite2 1.3.13 h58526e2_1001 conda-forge
graphviz 8.1.0 h28d9a01_0 conda-forge
gtk2 2.24.33 h90689f9_2 conda-forge
gts 0.7.6 h977cf35_4 conda-forge
gxx 12.3.0 h8d2909c_2 conda-forge
gxx_impl_linux-64 12.3.0 he2b93b0_2 conda-forge
gxx_linux-64 12.3.0 h8a814eb_2 conda-forge
h5netcdf 1.2.0 pyhd8ed1ab_0 conda-forge
h5py 3.10.0 nompi_py311h3839ddf_100 conda-forge
harfbuzz 8.2.1 h3d44ed6_0 conda-forge
hdf5 1.14.2 nompi_h4f84152_100 conda-forge
icu 73.2 h59595ed_0 conda-forge
importlib-metadata 6.8.0 pyha770c72_0 conda-forge
importlib_metadata 6.8.0 hd8ed1ab_0 conda-forge
ipykernel 6.26.0 pyhf8b6a83_0 conda-forge
ipython 8.17.2 pyh41d4057_0 conda-forge
jedi 0.19.1 pyhd8ed1ab_0 conda-forge
joblib 1.3.2 pyhd8ed1ab_0 conda-forge
jupyter_client 8.5.0 pyhd8ed1ab_0 conda-forge
jupyter_core 5.5.0 py311h38be061_0 conda-forge
kernel-headers_linux-64 2.6.32 he073ed8_16 conda-forge
keyutils 1.6.1 h166bdaf_0 conda-forge
kiwisolver 1.4.5 py311h9547e67_1 conda-forge
krb5 1.21.2 h659d440_0 conda-forge
lcms2 2.15 hb7c19ff_3 conda-forge
ld_impl_linux-64 2.40 h41732ed_0 conda-forge
lerc 4.0.0 h27087fc_0 conda-forge
libaec 1.1.2 h59595ed_1 conda-forge
libblas 3.9.0 19_linux64_openblas conda-forge
libbrotlicommon 1.1.0 hd590300_1 conda-forge
libbrotlidec 1.1.0 hd590300_1 conda-forge
libbrotlienc 1.1.0 hd590300_1 conda-forge
libcblas 3.9.0 19_linux64_openblas conda-forge
libcurl 8.4.0 hca28451_0 conda-forge
libdeflate 1.19 hd590300_0 conda-forge
libedit 3.1.20191231 he28a2e2_2 conda-forge
libev 4.33 h516909a_1 conda-forge
libexpat 2.5.0 hcb278e6_1 conda-forge
libffi 3.4.2 h7f98852_5 conda-forge
libgcc-devel_linux-64 12.3.0 h8bca6fd_2 conda-forge
libgcc-ng 13.2.0 h807b86a_2 conda-forge
libgd 2.3.3 h119a65a_9 conda-forge
libgfortran-ng 13.2.0 h69a702a_2 conda-forge
libgfortran5 13.2.0 ha4646dd_2 conda-forge
libglib 2.78.0 hebfc3b9_0 conda-forge
libgomp 13.2.0 h807b86a_2 conda-forge
libhwloc 2.9.3 default_h554bfaf_1009 conda-forge
libiconv 1.17 h166bdaf_0 conda-forge
libjpeg-turbo 3.0.0 hd590300_1 conda-forge
liblapack 3.9.0 19_linux64_openblas conda-forge
liblapacke 3.9.0 19_linux64_openblas conda-forge
libnghttp2 1.55.1 h47da74e_0 conda-forge
libnsl 2.0.1 hd590300_0 conda-forge
libopenblas 0.3.24 pthreads_h413a1c8_0 conda-forge
libpng 1.6.39 h753d276_0 conda-forge
librsvg 2.56.3 h98fae49_0 conda-forge
libsanitizer 12.3.0 h0f45ef3_2 conda-forge
libsodium 1.0.18 h36c2ea0_1 conda-forge
libsqlite 3.43.2 h2797004_0 conda-forge
libssh2 1.11.0 h0841786_0 conda-forge
libstdcxx-devel_linux-64 12.3.0 h8bca6fd_2 conda-forge
libstdcxx-ng 13.2.0 h7e041cc_2 conda-forge
libtiff 4.6.0 ha9c0a0a_2 conda-forge
libtool 2.4.7 h27087fc_0 conda-forge
libuuid 2.38.1 h0b41bf4_0 conda-forge
libwebp 1.3.2 h658648e_1 conda-forge
libwebp-base 1.3.2 hd590300_0 conda-forge
libxcb 1.15 h0b41bf4_0 conda-forge
libxml2 2.11.5 h232c23b_1 conda-forge
libzlib 1.2.13 hd590300_5 conda-forge
llvm-openmp 17.0.4 h4dfa4b3_0 conda-forge
logical-unification 0.4.6 pyhd8ed1ab_0 conda-forge
matplotlib-base 3.8.0 py311h54ef318_2 conda-forge
matplotlib-inline 0.1.6 pyhd8ed1ab_0 conda-forge
minikanren 1.0.3 pyhd8ed1ab_0 conda-forge
mkl 2022.2.1 h84fe81f_16997 conda-forge
mkl-service 2.4.0 py311hb711fc7_0 conda-forge
multipledispatch 0.6.0 py_0 conda-forge
munkres 1.1.4 pyh9f0ad1d_0 conda-forge
ncurses 6.4 h59595ed_2 conda-forge
nest-asyncio 1.5.8 pyhd8ed1ab_0 conda-forge
numpy 1.25.2 py311h64a7726_0 conda-forge
openblas 0.3.24 pthreads_h7a3da1a_0 conda-forge
openjpeg 2.5.0 h488ebb8_3 conda-forge
openssl 3.1.4 hd590300_0 conda-forge
packaging 23.2 pyhd8ed1ab_0 conda-forge
pandas 2.1.2 py311h320fe9a_0 conda-forge
pango 1.50.14 ha41ecd1_2 conda-forge
parso 0.8.3 pyhd8ed1ab_0 conda-forge
pcre2 10.40 hc3806b6_0 conda-forge
pexpect 4.8.0 pyh1a96a4e_2 conda-forge
pickleshare 0.7.5 py_1003 conda-forge
pillow 10.1.0 py311ha6c5da5_0 conda-forge
pip 23.3.1 pyhd8ed1ab_0 conda-forge
pixman 0.42.2 h59595ed_0 conda-forge
platformdirs 3.11.0 pyhd8ed1ab_0 conda-forge
prompt-toolkit 3.0.39 pyha770c72_0 conda-forge
prompt_toolkit 3.0.39 hd8ed1ab_0 conda-forge
psutil 5.9.5 py311h459d7ec_1 conda-forge
pthread-stubs 0.4 h36c2ea0_1001 conda-forge
ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge
pure_eval 0.2.2 pyhd8ed1ab_0 conda-forge
pygments 2.16.1 pyhd8ed1ab_0 conda-forge
pymc 5.9.1 hd8ed1ab_0 conda-forge
pymc-base 5.9.1 pyhd8ed1ab_0 conda-forge
pyparsing 3.1.1 pyhd8ed1ab_0 conda-forge
pytensor 2.17.3 py311hb755f60_0 conda-forge
pytensor-base 2.17.3 py311h320fe9a_0 conda-forge
python 3.11.6 hab00c5b_0_cpython conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python-graphviz 0.20.1 pyh22cad53_0 conda-forge
python-tzdata 2023.3 pyhd8ed1ab_0 conda-forge
python_abi 3.11 4_cp311 conda-forge
pytz 2023.3.post1 pyhd8ed1ab_0 conda-forge
pyzmq 25.1.1 py311h34ded2d_2 conda-forge
readline 8.2 h8228510_1 conda-forge
scikit-learn 1.3.2 py311hc009520_1 conda-forge
scipy 1.11.3 py311h64a7726_1 conda-forge
setuptools 68.2.2 pyhd8ed1ab_0 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
spyder-kernels 2.4.4 unix_pyh707e725_0 conda-forge
stack_data 0.6.2 pyhd8ed1ab_0 conda-forge
sysroot_linux-64 2.12 he073ed8_16 conda-forge
tbb 2021.10.0 h00ab1b0_2 conda-forge
threadpoolctl 3.2.0 pyha21a80b_0 conda-forge
tk 8.6.13 h2797004_0 conda-forge
toolz 0.12.0 pyhd8ed1ab_0 conda-forge
tornado 6.3.3 py311h459d7ec_1 conda-forge
traitlets 5.13.0 pyhd8ed1ab_0 conda-forge
typing-extensions 4.8.0 hd8ed1ab_0 conda-forge
typing_extensions 4.8.0 pyha770c72_0 conda-forge
tzdata 2023c h71feb2d_0 conda-forge
wcwidth 0.2.9 pyhd8ed1ab_0 conda-forge
wheel 0.41.3 pyhd8ed1ab_0 conda-forge
wurlitzer 3.0.3 pyhd8ed1ab_0 conda-forge
xarray 2023.10.1 pyhd8ed1ab_0 conda-forge
xarray-einstats 0.6.0 pyhd8ed1ab_0 conda-forge
xorg-kbproto 1.0.7 h7f98852_1002 conda-forge
xorg-libice 1.1.1 hd590300_0 conda-forge
xorg-libsm 1.2.4 h7391055_0 conda-forge
xorg-libx11 1.8.7 h8ee46fc_0 conda-forge
xorg-libxau 1.0.11 hd590300_0 conda-forge
xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge
xorg-libxext 1.3.4 h0b41bf4_2 conda-forge
xorg-libxrender 0.9.11 hd590300_0 conda-forge
xorg-renderproto 0.11.1 h7f98852_1002 conda-forge
xorg-xextproto 7.3.0 h0b41bf4_1003 conda-forge
xorg-xproto 7.0.31 h7f98852_1007 conda-forge
xz 5.2.6 h166bdaf_0 conda-forge
zeromq 4.3.5 h59595ed_0 conda-forge
zipp 3.17.0 pyhd8ed1ab_0 conda-forge
zlib 1.2.13 hd590300_5 conda-forge
zstd 1.5.5 hfc55251_0 conda-forge