Hi. After I reinstalled graphviz, pymc and bart did not work properly. So I reinstalled pymc and bart, but still got: cannot import name ‘_vectorize_node’ from ‘pytensor.graph.replace’
Thank you very much.
import lib：
from pathlib import Path
import arviz as az
import matplotlib.pyplot as plt
from matplotlib.pyplot import MultipleLocator
import numpy as np
import pandas as pd
import pymc as pm
import pytensor.tensor as pt
import pymc_bart as pmb
from sklearn.model_selection import train_test_split
%config InlineBackend.figure_format = "retina"
#from pymc.gp.util import plot_gp_dist
#print(f"Running on PyMC v{pm.__version__}")
The error message is as follows:
ImportError Traceback (most recent call last)
Cell In[24], line 13
11 #import pymc as pm
12 import pytensor.tensor as pt
---> 13 import pymc_bart as pmb
14 from sklearn.model_selection import train_test_split
16 get_ipython().run_line_magic('config', 'InlineBackend.figure_format = "retina"')
File ~\.conda\envs\pymc_env\Lib\site-packages\pymc_bart\__init__.py:14
1 # Copyright 2022 The PyMC Developers
2 #
3 # Licensed under the Apache License, Version 2.0 (the "License");
(...)
12 # See the License for the specific language governing permissions and
13 # limitations under the License.
---> 14 import pymc as pm
16 from pymc_bart.bart import BART
17 from pymc_bart.pgbart import PGBART
File ~\.conda\envs\pymc_env\Lib\site-packages\pymc\__init__.py:48
43 pytensor.config.gcc__cxxflags = augmented
46 __set_compiler_flags()
---> 48 from pymc import _version, gp, ode, sampling
49 from pymc.backends import *
50 from pymc.blocking import *
File ~\.conda\envs\pymc_env\Lib\site-packages\pymc\gp\__init__.py:15
1 # Copyright 2024 The PyMC Developers
2 #
3 # Licensed under the Apache License, Version 2.0 (the "License");
(...)
12 # See the License for the specific language governing permissions and
13 # limitations under the License.
---> 15 from pymc.gp import cov, mean, util
16 from pymc.gp.gp import (
17 TP,
18 Latent,
(...)
23 MarginalSparse,
24 )
25 from pymc.gp.hsgp_approx import HSGP, HSGPPeriodic
File ~\.conda\envs\pymc_env\Lib\site-packages\pymc\gp\util.py:26
23 from scipy.cluster.vq import kmeans
25 # Avoid circular dependency when importing modelcontext
---> 26 from pymc.distributions.distribution import Distribution
27 from pymc.model import modelcontext
28 from pymc.pytensorf import compile_pymc
File ~\.conda\envs\pymc_env\Lib\site-packages\pymc\distributions\__init__.py:15
1 # Copyright 2024 The PyMC Developers
2 #
3 # Licensed under the Apache License, Version 2.0 (the "License");
(...)
12 # See the License for the specific language governing permissions and
13 # limitations under the License.
---> 15 from pymc.distributions.censored import Censored
16 from pymc.distributions.continuous import (
17 AsymmetricLaplace,
18 Beta,
(...)
51 Weibull,
52 )
53 from pymc.distributions.discrete import (
54 Bernoulli,
55 BetaBinomial,
(...)
65 Poisson,
66 )
File ~\.conda\envs\pymc_env\Lib\site-packages\pymc\distributions\censored.py:21
18 from pytensor.tensor.random.op import RandomVariable
19 from pytensor.tensor.random.utils import normalize_size_param
---> 21 from pymc.distributions.distribution import (
22 Distribution,
23 SymbolicRandomVariable,
24 _support_point,
25 )
26 from pymc.distributions.shape_utils import (
27 _change_dist_size,
28 change_dist_size,
29 implicit_size_from_params,
30 rv_size_is_none,
31 )
32 from pymc.util import check_dist_not_registered
File ~\.conda\envs\pymc_env\Lib\site-packages\pymc\distributions\distribution.py:37
35 from pytensor.scan.op import Scan
36 from pytensor.tensor.basic import as_tensor_variable
---> 37 from pytensor.tensor.blockwise import safe_signature
38 from pytensor.tensor.random.op import RandomVariable
39 from pytensor.tensor.random.rewriting import local_subtensor_rv_lift
File ~\.conda\envs\pymc_env\Lib\site-packages\pytensor\tensor\blockwise.py:12
10 from pytensor.graph.null_type import NullType
11 from pytensor.graph.op import Op
---> 12 from pytensor.graph.replace import (
13 _vectorize_node,
14 _vectorize_not_needed,
15 vectorize_graph,
16 )
17 from pytensor.scalar import ScalarType
18 from pytensor.tensor import as_tensor_variable
ImportError: cannot import name '_vectorize_node' from 'pytensor.graph.replace' (C:\Users\Jj\.conda\envs\pymc_env\Lib\site-packages\pytensor\graph\replace.py)
my conda list as follows:
# Name Version Build Channel
arviz 0.18.0 pyhd8ed1ab_0 conda-forge
asttokens 2.0.5 pyhd3eb1b0_0
blas 1.0 mkl
bottleneck 1.3.7 py311hd7041d2_0
brotli 1.0.9 h2bbff1b_8
brotli-bin 1.0.9 h2bbff1b_8
bzip2 1.0.8 h2bbff1b_6
ca-certificates 2024.3.11 haa95532_0
cachetools 5.3.3 pyhd8ed1ab_0 conda-forge
cairo 1.16.0 haedb8bc_5
certifi 2024.2.2 pyhd8ed1ab_0 conda-forge
cloudpickle 3.0.0 pyhd8ed1ab_0 conda-forge
colorama 0.4.6 py311haa95532_0
comm 0.2.1 py311haa95532_0
cons 0.4.6 pyhd8ed1ab_0 conda-forge
contourpy 1.2.0 py311h59b6b97_0
cycler 0.11.0 pyhd3eb1b0_0
decorator 5.1.1 pyhd3eb1b0_0
dm-tree 0.1.8 py311hb041b4a_4 conda-forge
etuples 0.3.9 pyhd8ed1ab_0 conda-forge
executing 0.8.3 pyhd3eb1b0_0
expat 2.6.2 h63175ca_0 conda-forge
filelock 3.14.0 pyhd8ed1ab_0 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 h77eed37_2 conda-forge
fontconfig 2.14.1 h9c4af85_2
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
fonttools 4.51.0 py311h2bbff1b_0
freetype 2.12.1 ha860e81_0
fribidi 1.0.10 h8d14728_0 conda-forge
fsspec 2023.10.0 py311haa95532_0
getopt-win32 0.1 hcfcfb64_1 conda-forge
glib 2.78.4 hd77b12b_0
glib-tools 2.78.4 hd77b12b_0
graphite2 1.3.13 h63175ca_1003 conda-forge
graphviz 7.1.0 h51cb2cd_0 conda-forge
gts 0.7.6 h6b5321d_4 conda-forge
h5netcdf 1.3.0 pyhd8ed1ab_0 conda-forge
h5py 3.11.0 py311h765d3d0_0
harfbuzz 6.0.0 h196d34a_1 conda-forge
hdf5 1.12.1 h51c971a_3
icc_rt 2022.1.0 h6049295_2
icu 72.1 h63175ca_0 conda-forge
intel-openmp 2023.1.0 h59b6b97_46320
ipython 8.20.0 py311haa95532_0
ipywidgets 8.1.2 py311haa95532_0
jedi 0.18.1 py311haa95532_1
joblib 1.4.0 py311haa95532_0
jpeg 9e h2bbff1b_1
jupyterlab_widgets 3.0.10 py311haa95532_0
kiwisolver 1.4.4 py311hd77b12b_0
lcms2 2.12 h83e58a3_0
lerc 3.0 hd77b12b_0
libabseil 20240116.2 cxx17_h63175ca_0 conda-forge
libbrotlicommon 1.0.9 h2bbff1b_8
libbrotlidec 1.0.9 h2bbff1b_8
libbrotlienc 1.0.9 h2bbff1b_8
libdeflate 1.17 h2bbff1b_1
libexpat 2.6.2 h63175ca_0 conda-forge
libffi 3.4.4 hd77b12b_1
libgd 2.3.3 ha43c60c_1
libglib 2.78.4 ha17d25a_0
libiconv 1.17 hcfcfb64_2 conda-forge
libpng 1.6.39 h8cc25b3_0
libpython 2.2 py311h1ea47a8_3 conda-forge
libtiff 4.5.1 hd77b12b_0
libwebp-base 1.3.2 h2bbff1b_0
libxml2 2.10.4 h0ad7f3c_2
llvmlite 0.42.0 py311hf2fb9eb_0
logical-unification 0.4.6 pyhd8ed1ab_0 conda-forge
lz4-c 1.9.4 h2bbff1b_1
m2w64-binutils 2.25.1 5 conda-forge
m2w64-bzip2 1.0.6 6 conda-forge
m2w64-crt-git 5.0.0.4636.2595836 2 conda-forge
m2w64-gcc 5.3.0 6 conda-forge
m2w64-gcc-ada 5.3.0 6 conda-forge
m2w64-gcc-fortran 5.3.0 6 conda-forge
m2w64-gcc-libgfortran 5.3.0 6 conda-forge
m2w64-gcc-libs 5.3.0 7 conda-forge
m2w64-gcc-libs-core 5.3.0 7 conda-forge
m2w64-gcc-objc 5.3.0 6 conda-forge
m2w64-gmp 6.1.0 2 conda-forge
m2w64-headers-git 5.0.0.4636.c0ad18a 2 conda-forge
m2w64-isl 0.16.1 2 conda-forge
m2w64-libiconv 1.14 6 conda-forge
m2w64-libmangle-git 5.0.0.4509.2e5a9a2 2 conda-forge
m2w64-libwinpthread-git 5.0.0.4634.697f757 2 conda-forge
m2w64-make 4.1.2351.a80a8b8 2 conda-forge
m2w64-mpc 1.0.3 3 conda-forge
m2w64-mpfr 3.1.4 4 conda-forge
m2w64-pkg-config 0.29.1 2 conda-forge
m2w64-toolchain 5.3.0 7 conda-forge
m2w64-toolchain_win-64 2.5.0 h57928b3_0 conda-forge
m2w64-tools-git 5.0.0.4592.90b8472 2 conda-forge
m2w64-windows-default-manifest 6.4 3 conda-forge
m2w64-winpthreads-git 5.0.0.4634.697f757 2 conda-forge
m2w64-zlib 1.2.8 10 conda-forge
markdown-it-py 3.0.0 pyhd8ed1ab_0 conda-forge
matplotlib-base 3.8.4 py311hf62ec03_0
matplotlib-inline 0.1.6 py311haa95532_0
mdurl 0.1.2 pyhd8ed1ab_0 conda-forge
minikanren 1.0.3 pyhd8ed1ab_0 conda-forge
mkl 2023.1.0 h6b88ed4_46358
mkl-service 2.4.0 py311h2bbff1b_1
mkl_fft 1.3.8 py311h2bbff1b_0
mkl_random 1.2.4 py311h59b6b97_0
msys2-conda-epoch 20160418 1 conda-forge
multipledispatch 0.6.0 py_0 conda-forge
numba 0.59.1 py311h2c0921f_0 conda-forge
numexpr 2.8.7 py311h1fcbade_0
numpy 1.24.3 py311hdab7c0b_1
numpy-base 1.24.3 py311hd01c5d8_1
openjpeg 2.4.0 h4fc8c34_0
openssl 3.3.0 h2466b09_3 conda-forge
packaging 23.2 py311haa95532_0
pandas 2.2.1 py311hea22821_0
pango 1.50.12 hdffb7b3_1 conda-forge
parso 0.8.3 pyhd3eb1b0_0
pcre2 10.42 h0ff8eda_1
pillow 10.3.0 py311h2bbff1b_0
pip 24.0 py311haa95532_0
pixman 0.43.4 h63175ca_0 conda-forge
prompt-toolkit 3.0.43 py311haa95532_0
prompt_toolkit 3.0.43 hd3eb1b0_0
pure_eval 0.2.2 pyhd3eb1b0_0
pygments 2.18.0 pyhd8ed1ab_0 conda-forge
pymc 5.15.1 hd8ed1ab_0 conda-forge
pymc-bart 0.5.14 pyhd8ed1ab_0 conda-forge
pymc-base 5.15.1 pyhd8ed1ab_0 conda-forge
pyparsing 3.0.9 py311haa95532_0
pytensor 2.22.1 py311h6fc7ef1_0 conda-forge
pytensor-base 2.22.1 py311hbc92ba2_0 conda-forge
python 3.11.9 he1021f5_0
python-dateutil 2.9.0post0 py311haa95532_2
python-graphviz 0.20.3 pyh717bed2_0 conda-forge
python-tzdata 2023.3 pyhd3eb1b0_0
python_abi 3.11 2_cp311 conda-forge
pytz 2024.1 py311haa95532_0
rich 13.7.1 pyhd8ed1ab_0 conda-forge
scikit-learn 1.4.2 py311hf62ec03_1
scipy 1.12.0 py311h9f229c6_0
seaborn 0.12.2 py311haa95532_0
setuptools 69.5.1 py311haa95532_0
six 1.16.0 pyhd3eb1b0_1
sqlite 3.45.3 h2bbff1b_0
stack_data 0.2.0 pyhd3eb1b0_0
tbb 2021.8.0 h59b6b97_0
threadpoolctl 2.2.0 pyh0d69192_0
tk 8.6.14 h0416ee5_0
toolz 0.12.1 pyhd8ed1ab_0 conda-forge
traitlets 5.9.0 pypi_0 pypi
typing-extensions 4.11.0 py311haa95532_0
typing_extensions 4.11.0 py311haa95532_0
tzdata 2024a h04d1e81_0
ucrt 10.0.22621.0 h57928b3_0 conda-forge
unicodedata2 15.1.0 py311h2bbff1b_0
vc 14.2 h2eaa2aa_1
vc14_runtime 14.38.33135 h835141b_20 conda-forge
vs2015_runtime 14.38.33135 h22015db_20 conda-forge
wcwidth 0.2.5 pyhd3eb1b0_0
wheel 0.43.0 py311haa95532_0
widgetsnbextension 4.0.10 py311haa95532_0
xarray 2023.6.0 py311haa95532_0
xarray-einstats 0.7.0 pyhd8ed1ab_0 conda-forge
xz 5.4.6 h8cc25b3_1
zlib 1.2.13 h8cc25b3_1
zstd 1.5.5 hd43e919_2