Hi,
I’m trying to install pymc on an ubuntu server, but I’m getting the following error with the simplest stuff (for instance adding a pm.Normal):
ERROR (aesara.graph.rewriting.basic): Rewrite failure due to: constant_folding
ERROR (aesara.graph.rewriting.basic): node: InplaceDimShuffle{}(TensorConstant{(1,) of 2})
ERROR (aesara.graph.rewriting.basic): TRACEBACK:
ERROR (aesara.graph.rewriting.basic): Traceback (most recent call last):
File "/mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/graph/rewriting/basic.py", line 1933, in process_node
replacements = node_rewriter.transform(fgraph, node)
File "/mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/graph/rewriting/basic.py", line 1092, in transform
return self.fn(fgraph, node)
File "/mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/tensor/rewriting/basic.py", line 1141, in constant_folding
thunk = node.op.make_thunk(node, storage_map, compute_map, no_recycling=[])
File "/mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/link/c/op.py", line 131, in make_thunk
return self.make_c_thunk(node, storage_map, compute_map, no_recycling)
File "/mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/link/c/op.py", line 96, in make_c_thunk
outputs = cl.make_thunk(
File "/mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/link/c/basic.py", line 1202, in make_thunk
cthunk, module, in_storage, out_storage, error_storage = self.__compile__(
File "/mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/link/c/basic.py", line 1122, in __compile__
thunk, module = self.cthunk_factory(
File "/mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/link/c/basic.py", line 1647, in cthunk_factory
module = cache.module_from_key(key=key, lnk=self)
File "/mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/link/c/cmodule.py", line 1229, in module_from_key
module = lnk.compile_cmodule(location)
File "/mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/link/c/basic.py", line 1546, in compile_cmodule
module = c_compiler.compile_str(
File "/mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/link/c/cmodule.py", line 2640, in compile_str
raise CompileError(
aesara.link.c.exceptions.CompileError: Compilation failed (return status=1):
/usr/bin/g++ -shared -g -O3 -fno-math-errno -Wno-unused-label -Wno-unused-variable -Wno-write-strings -Wno-c++11-narrowing -fno-exceptions -fno-unwind-tables -fno-asynchronous-unwind-tables -march=skylake-avx512 -mmmx -mno-3dnow -msse -msse2 -msse3 -mssse3 -mno-sse4a -mcx16 -msahf -mmovbe -maes -mno-sha -mpclmul -mpopcnt -mabm -mno-lwp -mfma -mno-fma4 -mno-xop -mbmi -mno-sgx -mbmi2 -mno-pconfig -mno-wbnoinvd -mno-tbm -mavx -mavx2 -msse4.2 -msse4.1 -mlzcnt -mrtm -mhle -mrdrnd -mf16c -mfsgsbase -mrdseed -mprfchw -madx -mfxsr -mxsave -mxsaveopt -mavx512f -mno-avx512er -mavx512cd -mno-avx512pf -mno-prefetchwt1 -mclflushopt -mxsavec -mxsaves -mavx512dq -mavx512bw -mavx512vl -mno-avx512ifma -mno-avx512vbmi -mno-avx5124fmaps -mno-avx5124vnniw -mclwb -mno-mwaitx -mno-clzero -mpku -mno-rdpid -mno-gfni -mno-shstk -mno-avx512vbmi2 -mno-avx512vnni -mno-vaes -mno-vpclmulqdq -mno-avx512bitalg -mno-avx512vpopcntdq -mno-movdiri -mno-movdir64b -mno-waitpkg -mno-cldemote -mno-ptwrite --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=16384 -mtune=skylake-avx512 -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -m64 -fPIC -I/mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/numpy/core/include -I/mountpoint/software/.pyenv/versions/3.8.10/include/python3.8 -I/mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/link/c/c_code -L/mountpoint/software/.pyenv/versions/3.8.10/lib -fvisibility=hidden -o /home/ubuntu/.aesara/compiledir_Linux-5.4--generic-x86_64-with-glibc2.29-x86_64-3.8.10-64/tmpbdbclrtk/mba10987274f369529454d4a60996746c3927712a0b1b3928446a3c275151e2ee.so /home/ubuntu/.aesara/compiledir_Linux-5.4--generic-x86_64-with-glibc2.29-x86_64-3.8.10-64/tmpbdbclrtk/mod.cpp -lpython3.8
/usr/bin/ld: /mountpoint/software/.pyenv/versions/3.8.10/lib/libpython3.8.a(obmalloc.o): relocation R_X86_64_PC32 against symbol `stderr@@GLIBC_2.2.5' can not be used when making a shared object; recompile with -fPIC
/usr/bin/ld: final link failed: bad value
collect2: error: ld returned 1 exit status
I tried digging deeper and realized the issue raises from aesara. For example, the following simple code results in a similar error:
import numpy as np
import aesara
import aesara.tensor as at
x = at.vector()
y = at.vector()
z = x + x
z = z + y
f = aesara.function([x, y], z)
f(np.ones((2,)), np.ones((2,)))
The code above produced this error:
---------------------------------------------------------------------------
CompileError Traceback (most recent call last)
File /mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/link/vm.py:1246, in VMLinker.make_all(self, profiler, input_storage, output_storage, storage_map)
1242 # no-recycling is done at each VM.__call__ So there is
1243 # no need to cause duplicate c code by passing
1244 # no_recycling here.
1245 thunks.append(
-> 1246 node.op.make_thunk(node, storage_map, compute_map, [], impl=impl)
1247 )
1248 linker_make_thunk_time[node] = time.time() - thunk_start
File /mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/link/c/op.py:131, in COp.make_thunk(self, node, storage_map, compute_map, no_recycling, impl)
130 try:
--> 131 return self.make_c_thunk(node, storage_map, compute_map, no_recycling)
132 except (NotImplementedError, MethodNotDefined):
133 # We requested the c code, so don't catch the error.
File /mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/link/c/op.py:96, in COp.make_c_thunk(self, node, storage_map, compute_map, no_recycling)
95 raise NotImplementedError("float16")
---> 96 outputs = cl.make_thunk(
97 input_storage=node_input_storage, output_storage=node_output_storage
98 )
99 thunk, node_input_filters, node_output_filters = outputs
File /mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/link/c/basic.py:1202, in CLinker.make_thunk(self, input_storage, output_storage, storage_map, cache, **kwargs)
1201 init_tasks, tasks = self.get_init_tasks()
-> 1202 cthunk, module, in_storage, out_storage, error_storage = self.__compile__(
1203 input_storage, output_storage, storage_map, cache
1204 )
1206 res = _CThunk(cthunk, init_tasks, tasks, error_storage, module)
File /mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/link/c/basic.py:1122, in CLinker.__compile__(self, input_storage, output_storage, storage_map, cache)
1121 output_storage = tuple(output_storage)
-> 1122 thunk, module = self.cthunk_factory(
1123 error_storage,
1124 input_storage,
1125 output_storage,
1126 storage_map,
1127 cache,
1128 )
1129 return (
1130 thunk,
1131 module,
(...)
1140 error_storage,
1141 )
File /mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/link/c/basic.py:1647, in CLinker.cthunk_factory(self, error_storage, in_storage, out_storage, storage_map, cache)
1646 cache = get_module_cache()
-> 1647 module = cache.module_from_key(key=key, lnk=self)
1649 vars = self.inputs + self.outputs + self.orphans
File /mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/link/c/cmodule.py:1229, in ModuleCache.module_from_key(self, key, lnk)
1228 location = dlimport_workdir(self.dirname)
-> 1229 module = lnk.compile_cmodule(location)
1230 name = module.__file__
File /mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/link/c/basic.py:1546, in CLinker.compile_cmodule(self, location)
1545 _logger.debug(f"LOCATION {location}")
-> 1546 module = c_compiler.compile_str(
1547 module_name=mod.code_hash,
1548 src_code=src_code,
1549 location=location,
1550 include_dirs=self.header_dirs(),
1551 lib_dirs=self.lib_dirs(),
1552 libs=libs,
1553 preargs=preargs,
1554 )
1555 except Exception as e:
File /mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/link/c/cmodule.py:2640, in GCC_compiler.compile_str(module_name, src_code, location, include_dirs, lib_dirs, libs, preargs, py_module, hide_symbols)
2636 # We replace '\n' by '. ' in the error message because when Python
2637 # prints the exception, having '\n' in the text makes it more
2638 # difficult to read.
2639 # compile_stderr = compile_stderr.replace("\n", ". ")
-> 2640 raise CompileError(
2641 f"Compilation failed (return status={status}):\n{' '.join(cmd)}\n{compile_stderr}"
2642 )
2643 elif config.cmodule__compilation_warning and compile_stderr:
2644 # Print errors just below the command line.
CompileError: Compilation failed (return status=1):
/usr/bin/g++ -shared -g -O3 -fno-math-errno -Wno-unused-label -Wno-unused-variable -Wno-write-strings -march=skylake-avx512 -mmmx -mno-3dnow -msse -msse2 -msse3 -mssse3 -mno-sse4a -mcx16 -msahf -mmovbe -maes -mno-sha -mpclmul -mpopcnt -mabm -mno-lwp -mfma -mno-fma4 -mno-xop -mbmi -mno-sgx -mbmi2 -mno-pconfig -mno-wbnoinvd -mno-tbm -mavx -mavx2 -msse4.2 -msse4.1 -mlzcnt -mrtm -mhle -mrdrnd -mf16c -mfsgsbase -mrdseed -mprfchw -madx -mfxsr -mxsave -mxsaveopt -mavx512f -mno-avx512er -mavx512cd -mno-avx512pf -mno-prefetchwt1 -mclflushopt -mxsavec -mxsaves -mavx512dq -mavx512bw -mavx512vl -mno-avx512ifma -mno-avx512vbmi -mno-avx5124fmaps -mno-avx5124vnniw -mclwb -mno-mwaitx -mno-clzero -mpku -mno-rdpid -mno-gfni -mno-shstk -mno-avx512vbmi2 -mno-avx512vnni -mno-vaes -mno-vpclmulqdq -mno-avx512bitalg -mno-avx512vpopcntdq -mno-movdiri -mno-movdir64b -mno-waitpkg -mno-cldemote -mno-ptwrite --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=16384 -mtune=skylake-avx512 -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -m64 -fPIC -I/mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/numpy/core/include -I/mountpoint/software/.pyenv/versions/3.8.10/include/python3.8 -I/mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/link/c/c_code -L/mountpoint/software/.pyenv/versions/3.8.10/lib -fvisibility=hidden -o /home/ubuntu/.aesara/compiledir_Linux-5.4--generic-x86_64-with-glibc2.29-x86_64-3.8.10-64/tmpizflz_2w/mcabf2bd1e4c59125db2f6fb79ec0a05a4d7b0d6cb98868fbc588ab8cedf60652.so /home/ubuntu/.aesara/compiledir_Linux-5.4--generic-x86_64-with-glibc2.29-x86_64-3.8.10-64/tmpizflz_2w/mod.cpp -lpython3.8
/usr/bin/ld: /mountpoint/software/.pyenv/versions/3.8.10/lib/libpython3.8.a(obmalloc.o): relocation R_X86_64_PC32 against symbol `stderr@@GLIBC_2.2.5' can not be used when making a shared object; recompile with -fPIC
/usr/bin/ld: final link failed: bad value
collect2: error: ld returned 1 exit status
During handling of the above exception, another exception occurred:
CompileError Traceback (most recent call last)
Cell In [2], line 9
7 z = x + x
8 z = z + y
----> 9 f = aesara.function([x, y], z)
10 f(np.ones((2,)), np.ones((2,)))
File /mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/compile/function/__init__.py:317, in function(inputs, outputs, mode, updates, givens, no_default_updates, accept_inplace, name, rebuild_strict, allow_input_downcast, profile, on_unused_input)
311 fn = orig_function(
312 inputs, outputs, mode=mode, accept_inplace=accept_inplace, name=name
313 )
314 else:
315 # note: pfunc will also call orig_function -- orig_function is
316 # a choke point that all compilation must pass through
--> 317 fn = pfunc(
318 params=inputs,
319 outputs=outputs,
320 mode=mode,
321 updates=updates,
322 givens=givens,
323 no_default_updates=no_default_updates,
324 accept_inplace=accept_inplace,
325 name=name,
326 rebuild_strict=rebuild_strict,
327 allow_input_downcast=allow_input_downcast,
328 on_unused_input=on_unused_input,
329 profile=profile,
330 output_keys=output_keys,
331 )
332 return fn
File /mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/compile/function/pfunc.py:371, in pfunc(params, outputs, mode, updates, givens, no_default_updates, accept_inplace, name, rebuild_strict, allow_input_downcast, profile, on_unused_input, output_keys, fgraph)
357 profile = ProfileStats(message=profile)
359 inputs, cloned_outputs = construct_pfunc_ins_and_outs(
360 params,
361 outputs,
(...)
368 fgraph=fgraph,
369 )
--> 371 return orig_function(
372 inputs,
373 cloned_outputs,
374 mode,
375 accept_inplace=accept_inplace,
376 name=name,
377 profile=profile,
378 on_unused_input=on_unused_input,
379 output_keys=output_keys,
380 fgraph=fgraph,
381 )
File /mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/compile/function/types.py:1759, in orig_function(inputs, outputs, mode, accept_inplace, name, profile, on_unused_input, output_keys, fgraph)
1747 m = Maker(
1748 inputs,
1749 outputs,
(...)
1756 fgraph=fgraph,
1757 )
1758 with config.change_flags(compute_test_value="off"):
-> 1759 fn = m.create(defaults)
1760 finally:
1761 t2 = time.time()
File /mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/compile/function/types.py:1652, in FunctionMaker.create(self, input_storage, trustme, storage_map)
1649 start_import_time = aesara.link.c.cmodule.import_time
1651 with config.change_flags(traceback__limit=config.traceback__compile_limit):
-> 1652 _fn, _i, _o = self.linker.make_thunk(
1653 input_storage=input_storage_lists, storage_map=storage_map
1654 )
1656 end_linker = time.time()
1658 linker_time = end_linker - start_linker
File /mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/link/basic.py:254, in LocalLinker.make_thunk(self, input_storage, output_storage, storage_map, **kwargs)
247 def make_thunk(
248 self,
249 input_storage: Optional["InputStorageType"] = None,
(...)
252 **kwargs,
253 ) -> Tuple["BasicThunkType", "InputStorageType", "OutputStorageType"]:
--> 254 return self.make_all(
255 input_storage=input_storage,
256 output_storage=output_storage,
257 storage_map=storage_map,
258 )[:3]
File /mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/link/vm.py:1255, in VMLinker.make_all(self, profiler, input_storage, output_storage, storage_map)
1253 thunks[-1].lazy = False
1254 except Exception:
-> 1255 raise_with_op(fgraph, node)
1257 t1 = time.time()
1259 if self.profile:
File /mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/link/utils.py:534, in raise_with_op(fgraph, node, thunk, exc_info, storage_map)
529 warnings.warn(
530 f"{exc_type} error does not allow us to add an extra error message"
531 )
532 # Some exception need extra parameter in inputs. So forget the
533 # extra long error message in that case.
--> 534 raise exc_value.with_traceback(exc_trace)
File /mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/link/vm.py:1246, in VMLinker.make_all(self, profiler, input_storage, output_storage, storage_map)
1241 thunk_start = time.time()
1242 # no-recycling is done at each VM.__call__ So there is
1243 # no need to cause duplicate c code by passing
1244 # no_recycling here.
1245 thunks.append(
-> 1246 node.op.make_thunk(node, storage_map, compute_map, [], impl=impl)
1247 )
1248 linker_make_thunk_time[node] = time.time() - thunk_start
1249 if not hasattr(thunks[-1], "lazy"):
1250 # We don't want all ops maker to think about lazy Ops.
1251 # So if they didn't specify that its lazy or not, it isn't.
1252 # If this member isn't present, it will crash later.
File /mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/link/c/op.py:131, in COp.make_thunk(self, node, storage_map, compute_map, no_recycling, impl)
127 self.prepare_node(
128 node, storage_map=storage_map, compute_map=compute_map, impl="c"
129 )
130 try:
--> 131 return self.make_c_thunk(node, storage_map, compute_map, no_recycling)
132 except (NotImplementedError, MethodNotDefined):
133 # We requested the c code, so don't catch the error.
134 if impl == "c":
File /mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/link/c/op.py:96, in COp.make_c_thunk(self, node, storage_map, compute_map, no_recycling)
94 print(f"Disabling C code for {self} due to unsupported float16")
95 raise NotImplementedError("float16")
---> 96 outputs = cl.make_thunk(
97 input_storage=node_input_storage, output_storage=node_output_storage
98 )
99 thunk, node_input_filters, node_output_filters = outputs
101 @is_cthunk_wrapper_type
102 def rval():
File /mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/link/c/basic.py:1202, in CLinker.make_thunk(self, input_storage, output_storage, storage_map, cache, **kwargs)
1167 """Compile this linker's `self.fgraph` and return a function that performs the computations.
1168
1169 The return values can be used as follows:
(...)
1199
1200 """
1201 init_tasks, tasks = self.get_init_tasks()
-> 1202 cthunk, module, in_storage, out_storage, error_storage = self.__compile__(
1203 input_storage, output_storage, storage_map, cache
1204 )
1206 res = _CThunk(cthunk, init_tasks, tasks, error_storage, module)
1207 res.nodes = self.node_order
File /mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/link/c/basic.py:1122, in CLinker.__compile__(self, input_storage, output_storage, storage_map, cache)
1120 input_storage = tuple(input_storage)
1121 output_storage = tuple(output_storage)
-> 1122 thunk, module = self.cthunk_factory(
1123 error_storage,
1124 input_storage,
1125 output_storage,
1126 storage_map,
1127 cache,
1128 )
1129 return (
1130 thunk,
1131 module,
(...)
1140 error_storage,
1141 )
File /mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/link/c/basic.py:1647, in CLinker.cthunk_factory(self, error_storage, in_storage, out_storage, storage_map, cache)
1645 if cache is None:
1646 cache = get_module_cache()
-> 1647 module = cache.module_from_key(key=key, lnk=self)
1649 vars = self.inputs + self.outputs + self.orphans
1650 # List of indices that should be ignored when passing the arguments
1651 # (basically, everything that the previous call to uniq eliminated)
File /mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/link/c/cmodule.py:1229, in ModuleCache.module_from_key(self, key, lnk)
1227 try:
1228 location = dlimport_workdir(self.dirname)
-> 1229 module = lnk.compile_cmodule(location)
1230 name = module.__file__
1231 assert name.startswith(location)
File /mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/link/c/basic.py:1546, in CLinker.compile_cmodule(self, location)
1544 try:
1545 _logger.debug(f"LOCATION {location}")
-> 1546 module = c_compiler.compile_str(
1547 module_name=mod.code_hash,
1548 src_code=src_code,
1549 location=location,
1550 include_dirs=self.header_dirs(),
1551 lib_dirs=self.lib_dirs(),
1552 libs=libs,
1553 preargs=preargs,
1554 )
1555 except Exception as e:
1556 e.args += (str(self.fgraph),)
File /mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/link/c/cmodule.py:2640, in GCC_compiler.compile_str(module_name, src_code, location, include_dirs, lib_dirs, libs, preargs, py_module, hide_symbols)
2632 print(
2633 "Check if package python-dev or python-devel is installed."
2634 )
2636 # We replace '\n' by '. ' in the error message because when Python
2637 # prints the exception, having '\n' in the text makes it more
2638 # difficult to read.
2639 # compile_stderr = compile_stderr.replace("\n", ". ")
-> 2640 raise CompileError(
2641 f"Compilation failed (return status={status}):\n{' '.join(cmd)}\n{compile_stderr}"
2642 )
2643 elif config.cmodule__compilation_warning and compile_stderr:
2644 # Print errors just below the command line.
2645 print(compile_stderr)
CompileError: Compilation failed (return status=1):
/usr/bin/g++ -shared -g -O3 -fno-math-errno -Wno-unused-label -Wno-unused-variable -Wno-write-strings -march=skylake-avx512 -mmmx -mno-3dnow -msse -msse2 -msse3 -mssse3 -mno-sse4a -mcx16 -msahf -mmovbe -maes -mno-sha -mpclmul -mpopcnt -mabm -mno-lwp -mfma -mno-fma4 -mno-xop -mbmi -mno-sgx -mbmi2 -mno-pconfig -mno-wbnoinvd -mno-tbm -mavx -mavx2 -msse4.2 -msse4.1 -mlzcnt -mrtm -mhle -mrdrnd -mf16c -mfsgsbase -mrdseed -mprfchw -madx -mfxsr -mxsave -mxsaveopt -mavx512f -mno-avx512er -mavx512cd -mno-avx512pf -mno-prefetchwt1 -mclflushopt -mxsavec -mxsaves -mavx512dq -mavx512bw -mavx512vl -mno-avx512ifma -mno-avx512vbmi -mno-avx5124fmaps -mno-avx5124vnniw -mclwb -mno-mwaitx -mno-clzero -mpku -mno-rdpid -mno-gfni -mno-shstk -mno-avx512vbmi2 -mno-avx512vnni -mno-vaes -mno-vpclmulqdq -mno-avx512bitalg -mno-avx512vpopcntdq -mno-movdiri -mno-movdir64b -mno-waitpkg -mno-cldemote -mno-ptwrite --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=16384 -mtune=skylake-avx512 -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -m64 -fPIC -I/mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/numpy/core/include -I/mountpoint/software/.pyenv/versions/3.8.10/include/python3.8 -I/mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/aesara/link/c/c_code -L/mountpoint/software/.pyenv/versions/3.8.10/lib -fvisibility=hidden -o /home/ubuntu/.aesara/compiledir_Linux-5.4--generic-x86_64-with-glibc2.29-x86_64-3.8.10-64/tmpizflz_2w/mcabf2bd1e4c59125db2f6fb79ec0a05a4d7b0d6cb98868fbc588ab8cedf60652.so /home/ubuntu/.aesara/compiledir_Linux-5.4--generic-x86_64-with-glibc2.29-x86_64-3.8.10-64/tmpizflz_2w/mod.cpp -lpython3.8
/usr/bin/ld: /mountpoint/software/.pyenv/versions/3.8.10/lib/libpython3.8.a(obmalloc.o): relocation R_X86_64_PC32 against symbol `stderr@@GLIBC_2.2.5' can not be used when making a shared object; recompile with -fPIC
/usr/bin/ld: final link failed: bad value
collect2: error: ld returned 1 exit status
Apply node that caused the error: Elemwise{add,no_inplace}(<TensorType(float64, (None,))>, <TensorType(float64, (None,))>, <TensorType(float64, (None,))>)
Toposort index: 0
Inputs types: [TensorType(float64, (None,)), TensorType(float64, (None,)), TensorType(float64, (None,))]
Backtrace when the node is created (use Aesara flag traceback__limit=N to make it longer):
File "/mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/ipykernel/zmqshell.py", line 528, in run_cell
return super().run_cell(*args, **kwargs)
File "/mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/IPython/core/interactiveshell.py", line 2885, in run_cell
result = self._run_cell(
File "/mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/IPython/core/interactiveshell.py", line 2940, in _run_cell
return runner(coro)
File "/mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/IPython/core/async_helpers.py", line 129, in _pseudo_sync_runner
coro.send(None)
File "/mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/IPython/core/interactiveshell.py", line 3139, in run_cell_async
has_raised = await self.run_ast_nodes(code_ast.body, cell_name,
File "/mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/IPython/core/interactiveshell.py", line 3318, in run_ast_nodes
if await self.run_code(code, result, async_=asy):
File "/mountpoint/code/environments/venv_3.8.10/lib/python3.8/site-packages/IPython/core/interactiveshell.py", line 3378, in run_code
exec(code_obj, self.user_global_ns, self.user_ns)
File "/tmp/ipykernel_2949523/3083763268.py", line 8, in <module>
z = z + y
HINT: Use a linker other than the C linker to print the inputs' shapes and strides.
HINT: Use the Aesara flag `exception_verbosity=high` for a debug print-out and storage map footprint of this Apply node.
I’m not sure why I’m getting this error or how to fix it. I tried reinstalling everything but that didn’t help.
Please let me know if you know what’s going wrong.
Thanks