Pytensor support to Apple Accelerate BLAS with conda-forge on MacOS 15

Questions v5
1

There were several threads about problems after update to MacOS 15, but no topic discussed exactly the Accelerate support;

Before update to MacOS 15 I have working recipe for setup withi conda-forge, now the environment doesn’t use Apple accelerate.

. Using PyTensor installed via pip, I’m able to successfully run tests like:

python $(python -c “import pathlib, pytensor; print(pathlib.Path(pytensor.file).parent / ‘misc/check_blas.py’)”)

However, this setup relies on NumPy’s C-API based implementation for BLAS functions, which results in much slower computations. On the other hand, when using a separate environment installed via conda-forge, I encounter a compilation error when running the same command.

I am on apple silicon M1. Which flags I should use to be able to use accelerate BLAS again/ does anyone managed do reproducible setup with accelerate and compilers from conda forge correctly?

2

Maybe this is useful? I am not sure what any of it means.

Screenshot 2024-09-24 at 7.02.28 PM
Screenshot 2024-09-24 at 7.02.28 PM946×1011 115 KB

3

thanks, it seems that with some trial and error I am able to set BLAS to accelerate, but apart segmentation errors with clang++ (which is common to other threads) after running this (pointing to my pyenv with conda)

export LDFLAGS='gcc__cxxflags=-L/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib -march=native, optimizer=fast_compile' ; python $(python -c "import pathlib, pytensor; print(pathlib.Path(pytensor.__file__).parent / 'misc/check_blas.py')")

I am getting this error (including diagnostic message)


Some PyTensor flags:
    blas__ldflags= -framework Accelerate
    compiledir= /Users/daniel/.pytensor/compiledir_macOS-15.0-arm64-arm-64bit-arm-3.12.6-64
    floatX= float64
    device= cpu
Some OS information:
    sys.platform= darwin
    sys.version= 3.12.6 | packaged by conda-forge | (main, Sep 22 2024, 14:07:06) [Clang 17.0.6 ]
    sys.prefix= /Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12
Some environment variables:
    MKL_NUM_THREADS= None
    OMP_NUM_THREADS= None
    GOTO_NUM_THREADS= None

Numpy config: (used when the PyTensor flag "blas__ldflags" is empty)
Build Dependencies:
  blas:
    detection method: pkgconfig
    found: true
    include directory: /Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/include
    lib directory: /Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib
    name: blas
    openblas configuration: unknown
    pc file directory: /Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/pkgconfig
    version: 3.9.0
  lapack:
    detection method: internal
    found: true
    include directory: unknown
    lib directory: unknown
    name: dep4569863840
    openblas configuration: unknown
    pc file directory: unknown
    version: 1.26.4
Compilers:
  c:
    args: -ftree-vectorize, -fPIC, -fstack-protector-strong, -O2, -pipe, -isystem,
      /Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/include,
      -fdebug-prefix-map=/Users/runner/miniforge3/conda-bld/numpy_1707225421156/work=/usr/local/src/conda/numpy-1.26.4,
      -fdebug-prefix-map=/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12=/usr/local/src/conda-prefix,
      -D_FORTIFY_SOURCE=2, -isystem, /Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/include,
      -mmacosx-version-min=11.0
    commands: arm64-apple-darwin20.0.0-clang
    linker: ld64
    linker args: -Wl,-headerpad_max_install_names, -Wl,-dead_strip_dylibs, -Wl,-rpath,/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib,
      -L/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib,
      -ftree-vectorize, -fPIC, -fstack-protector-strong, -O2, -pipe, -isystem, /Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/include,
      -fdebug-prefix-map=/Users/runner/miniforge3/conda-bld/numpy_1707225421156/work=/usr/local/src/conda/numpy-1.26.4,
      -fdebug-prefix-map=/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12=/usr/local/src/conda-prefix,
      -D_FORTIFY_SOURCE=2, -isystem, /Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/include,
      -mmacosx-version-min=11.0
    name: clang
    version: 16.0.6
  c++:
    args: -ftree-vectorize, -fPIC, -fstack-protector-strong, -O2, -pipe, -stdlib=libc++,
      -fvisibility-inlines-hidden, -fmessage-length=0, -isystem, /Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/include,
      -fdebug-prefix-map=/Users/runner/miniforge3/conda-bld/numpy_1707225421156/work=/usr/local/src/conda/numpy-1.26.4,
      -fdebug-prefix-map=/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12=/usr/local/src/conda-prefix,
      -D_FORTIFY_SOURCE=2, -isystem, /Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/include,
      -mmacosx-version-min=11.0
    commands: arm64-apple-darwin20.0.0-clang++
    linker: ld64
    linker args: -Wl,-headerpad_max_install_names, -Wl,-dead_strip_dylibs, -Wl,-rpath,/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib,
      -L/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib,
      -ftree-vectorize, -fPIC, -fstack-protector-strong, -O2, -pipe, -stdlib=libc++,
      -fvisibility-inlines-hidden, -fmessage-length=0, -isystem, /Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/include,
      -fdebug-prefix-map=/Users/runner/miniforge3/conda-bld/numpy_1707225421156/work=/usr/local/src/conda/numpy-1.26.4,
      -fdebug-prefix-map=/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12=/usr/local/src/conda-prefix,
      -D_FORTIFY_SOURCE=2, -isystem, /Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/include,
      -mmacosx-version-min=11.0
    name: clang
    version: 16.0.6
  cython:
    commands: cython
    linker: cython
    name: cython
    version: 3.0.8
Machine Information:
  build:
    cpu: aarch64
    endian: little
    family: aarch64
    system: darwin
  cross-compiled: true
  host:
    cpu: arm64
    endian: little
    family: aarch64
    system: darwin
Python Information:
  path: /Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/bin/python
  version: '3.12'
SIMD Extensions:
  baseline:
  - NEON
  - NEON_FP16
  - NEON_VFPV4
  - ASIMD
  found:
  - ASIMDHP
  not found:
  - ASIMDFHM

Numpy dot module: numpy
Numpy location: /Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/numpy/__init__.py
Numpy version: 1.26.4

You can find the C code in this temporary file: /var/folders/xq/sl7xjp_95qx7wfngy6s6vvg00000gn/T/pytensor_compilation_error_z14as_k1
ERROR (pytensor.graph.rewriting.basic): Rewrite failure due to: constant_folding
ERROR (pytensor.graph.rewriting.basic): node: ExpandDims{axes=[0, 1]}(0.8)
ERROR (pytensor.graph.rewriting.basic): TRACEBACK:
ERROR (pytensor.graph.rewriting.basic): Traceback (most recent call last):
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/graph/rewriting/basic.py", line 1909, in process_node
    replacements = node_rewriter.transform(fgraph, node)
                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/graph/rewriting/basic.py", line 1081, in transform
    return self.fn(fgraph, node)
           ^^^^^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/tensor/rewriting/basic.py", line 1122, in constant_folding
    thunk = node.op.make_thunk(node, storage_map, compute_map, no_recycling=[])
            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/c/op.py", line 119, in make_thunk
    return self.make_c_thunk(node, storage_map, compute_map, no_recycling)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/c/op.py", line 84, in make_c_thunk
    outputs = cl.make_thunk(
              ^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1182, in make_thunk
    cthunk, module, in_storage, out_storage, error_storage = self.__compile__(
                                                             ^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1103, in __compile__
    thunk, module = self.cthunk_factory(
                    ^^^^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1627, in cthunk_factory
    module = cache.module_from_key(key=key, lnk=self)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/c/cmodule.py", line 1255, in module_from_key
    module = lnk.compile_cmodule(location)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1528, in compile_cmodule
    module = c_compiler.compile_str(
             ^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/c/cmodule.py", line 2654, in compile_str
    raise CompileError(
pytensor.link.c.exceptions.CompileError: Compilation failed (return status=1):
/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/bin/clang++ -dynamiclib -g -O3 -fno-math-errno -Wno-unused-label -Wno-unused-variable -Wno-write-strings -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -fPIC -undefined dynamic_lookup -I/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/numpy/core/include -I/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/include/python3.12 -I/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/c/c_code -L/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib -fvisibility=hidden -o /Users/daniel/.pytensor/compiledir_macOS-15.0-arm64-arm-64bit-arm-3.12.6-64/tmp1um0ll_l/mb782a9925f26f74c46a75d98e1484e89ff6c5c482e4b63d738d2bb93e667f8f6.so /Users/daniel/.pytensor/compiledir_macOS-15.0-arm64-arm-64bit-arm-3.12.6-64/tmp1um0ll_l/mod.cpp
clang++: error: unable to execute command: Segmentation fault: 11
clang++: error: linker command failed due to signal (use -v to see invocation)



You can find the C code in this temporary file: /var/folders/xq/sl7xjp_95qx7wfngy6s6vvg00000gn/T/pytensor_compilation_error_51fao5ga
ERROR (pytensor.graph.rewriting.basic): Rewrite failure due to: constant_folding
ERROR (pytensor.graph.rewriting.basic): node: ExpandDims{axes=[0, 1]}(0.4)
ERROR (pytensor.graph.rewriting.basic): TRACEBACK:
ERROR (pytensor.graph.rewriting.basic): Traceback (most recent call last):
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/graph/rewriting/basic.py", line 1909, in process_node
    replacements = node_rewriter.transform(fgraph, node)
                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/graph/rewriting/basic.py", line 1081, in transform
    return self.fn(fgraph, node)
           ^^^^^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/tensor/rewriting/basic.py", line 1122, in constant_folding
    thunk = node.op.make_thunk(node, storage_map, compute_map, no_recycling=[])
            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/c/op.py", line 119, in make_thunk
    return self.make_c_thunk(node, storage_map, compute_map, no_recycling)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/c/op.py", line 84, in make_c_thunk
    outputs = cl.make_thunk(
              ^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1182, in make_thunk
    cthunk, module, in_storage, out_storage, error_storage = self.__compile__(
                                                             ^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1103, in __compile__
    thunk, module = self.cthunk_factory(
                    ^^^^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1627, in cthunk_factory
    module = cache.module_from_key(key=key, lnk=self)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/c/cmodule.py", line 1255, in module_from_key
    module = lnk.compile_cmodule(location)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1528, in compile_cmodule
    module = c_compiler.compile_str(
             ^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/c/cmodule.py", line 2654, in compile_str
    raise CompileError(
pytensor.link.c.exceptions.CompileError: Compilation failed (return status=1):
/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/bin/clang++ -dynamiclib -g -O3 -fno-math-errno -Wno-unused-label -Wno-unused-variable -Wno-write-strings -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -fPIC -undefined dynamic_lookup -I/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/numpy/core/include -I/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/include/python3.12 -I/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/c/c_code -L/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib -fvisibility=hidden -o /Users/daniel/.pytensor/compiledir_macOS-15.0-arm64-arm-64bit-arm-3.12.6-64/tmp23hcoizr/mb782a9925f26f74c46a75d98e1484e89ff6c5c482e4b63d738d2bb93e667f8f6.so /Users/daniel/.pytensor/compiledir_macOS-15.0-arm64-arm-64bit-arm-3.12.6-64/tmp23hcoizr/mod.cpp
clang++: error: unable to execute command: Segmentation fault: 11
clang++: error: linker command failed due to signal (use -v to see invocation)


Traceback (most recent call last):
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/tensor/blas.py", line 428, in _ldflags
    assert t0 == "-"
           ^^^^^^^^^
AssertionError

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/vm.py", line 1227, in make_all
    node.op.make_thunk(node, storage_map, compute_map, [], impl=impl)
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/c/op.py", line 119, in make_thunk
    return self.make_c_thunk(node, storage_map, compute_map, no_recycling)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/c/op.py", line 84, in make_c_thunk
    outputs = cl.make_thunk(
              ^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1182, in make_thunk
    cthunk, module, in_storage, out_storage, error_storage = self.__compile__(
                                                             ^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1103, in __compile__
    thunk, module = self.cthunk_factory(
                    ^^^^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1614, in cthunk_factory
    key = self.cmodule_key()
          ^^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1266, in cmodule_key
    compile_args=self.compile_args(),
                 ^^^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 947, in compile_args
    ret += x.c_compile_args(c_compiler=c_compiler)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/tensor/blas.py", line 496, in c_compile_args
    return ldflags(libs=False, flags=True)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/tensor/blas.py", line 359, in ldflags
    return _ldflags(
           ^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/tensor/blas.py", line 430, in _ldflags
    raise ValueError(f'invalid token "{t}" in ldflags_str: "{ldflags_str}"')
ValueError: invalid token "Accelerate" in ldflags_str: "-framework Accelerate"

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/misc/check_blas.py", line 274, in <module>
    t, impl = execute(
              ^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/misc/check_blas.py", line 57, in execute
    f = pytensor.function([], updates=[(c, 0.4 * c + 0.8 * dot(a, b))])
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/compile/function/__init__.py", line 318, in function
    fn = pfunc(
         ^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/compile/function/pfunc.py", line 465, in pfunc
    return orig_function(
           ^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/compile/function/types.py", line 1762, in orig_function
    fn = m.create(defaults)
         ^^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/compile/function/types.py", line 1654, in create
    _fn, _i, _o = self.linker.make_thunk(
                  ^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/basic.py", line 245, in make_thunk
    return self.make_all(
           ^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/vm.py", line 1236, in make_all
    raise_with_op(fgraph, node)
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/utils.py", line 524, in raise_with_op
    raise exc_value.with_traceback(exc_trace)
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/vm.py", line 1227, in make_all
    node.op.make_thunk(node, storage_map, compute_map, [], impl=impl)
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/c/op.py", line 119, in make_thunk
    return self.make_c_thunk(node, storage_map, compute_map, no_recycling)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/c/op.py", line 84, in make_c_thunk
    outputs = cl.make_thunk(
              ^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1182, in make_thunk
    cthunk, module, in_storage, out_storage, error_storage = self.__compile__(
                                                             ^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1103, in __compile__
    thunk, module = self.cthunk_factory(
                    ^^^^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1614, in cthunk_factory
    key = self.cmodule_key()
          ^^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1266, in cmodule_key
    compile_args=self.compile_args(),
                 ^^^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 947, in compile_args
    ret += x.c_compile_args(c_compiler=c_compiler)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/tensor/blas.py", line 496, in c_compile_args
    return ldflags(libs=False, flags=True)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/tensor/blas.py", line 359, in ldflags
    return _ldflags(
           ^^^^^^^^^
  File "/Users/daniel/.pyenv/versions/miniforge3-latest/envs/voxel-bayes-3.12/lib/python3.12/site-packages/pytensor/tensor/blas.py", line 430, in _ldflags
    raise ValueError(f'invalid token "{t}" in ldflags_str: "{ldflags_str}"')
ValueError: invalid token "Accelerate" in ldflags_str: "-framework Accelerate"
Apply node that caused the error: Gemm{inplace}(<Matrix(float64, shape=(?, ?))>, 0.8, <Matrix(float64, shape=(?, ?))>, <Matrix(float64, shape=(?, ?))>, 0.4)
Toposort index: 0
Inputs types: [TensorType(float64, shape=(None, None)), TensorType(float64, shape=()), TensorType(float64, shape=(None, None)), TensorType(float64, shape=(None, None)), TensorType(float64, shape=())]

HINT: Use a linker other than the C linker to print the inputs' shapes and strides.
HINT: Re-running with most PyTensor optimizations disabled could provide a back-trace showing when this node was created. This can be done by setting the PyTensor flag 'optimizer=fast_compile'. If that does not work, PyTensor optimizations can be disabled with 'optimizer=None'.
HINT: Use the PyTensor flag `exception_verbosity=high` for a debug print-out and storage map footprint of this Apply node.

I deleted repeating segmentation fault

4

The segmentation faults are discussed here All models broken after MacOS Sequoia update (which don’r provide a solution for me yet, I deleted and reinstalled x, the other issue is if I correctly applied framework accelerate flag