Observed data with uncertainty described by an irregular distribution

Questions v5
2

So if I understand you correctly, you want c and d to be source of random noise and not like priors that update and not use SMC-ABC. In that case, there is only one way (that I am aware of) to achieve this and this is defining your own updating step for c and d so that they are not updated like normal priors. This was discussed recently in

See also the links there. As a starters you can try the following:

class NormalNoiseStep(BlockedStep):
    def __init__(self, var, mu, sd, size):
        model = pm.modelcontext(None)
        value_var = model.rvs_to_values[var]
        self.vars = [value_var]
        self.name = value_var.name
        self.mu = mu
        self.size = size
        self.sd = sd

    def step(self, point: dict):

        draw = np.random.normal(self.mu, self.sd, size=self.size)
        point[self.name] = draw
        return point, []

In your model then you would use this as

with pm.Model() as model:
  a = pm.Uniform("a", lower=0.1*16, upper=3*16)
  b = pm.Uniform("b", lower=0.1*14, upper=3*14)
  c = pm.Normal("c", mu ,sd, size=N)
  d = pm.Normal("d", mu ,sd, size=N)
  
  steps = [NormalNoiseStep(c, mu, sd, N), NormalNoiseStep(d, mu, sd, N)]

  #you can now use c and d as any tensor in your operations
  trace = pm.sample(**sample_parameters, step=steps)

This is outside the boundaries of regular Bayesian modelling though so stuff like convergence statistics, r_hat may or may not be meaningful in this context. Perhaps a good thing to do is indeed cross-compare results with SMC-ABC. Never used this method in detail so don’t have intuition about it.

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